miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|154092823|gb|EV525796.1|EV525796 GGACGCAGAGAAAAGAAAAGAATCACTCCCGGTGGTAATAATCTAAACTCAACCTCAATAATGTCGGCGTCTTTCTCCGT
CGCATGACCCCATTGATGTCTAAGGGAAGCCTTAGTTGAATGATTGTCTTAGTGCTACGAATCACAGATCACTATGGACA
AAGAGAGTGTAAATGGTATTGGATCACCTCAAAGATCCAACAGCGTTGACAGCTTAAAGGTTGAATCTCCGGGTGGTTCG
ACGAGAAAAGGTTTCGGTTTGAAGAAATGGAGAAGGATCAAGAGAGATACTCCTCCAGTGAAAGACGAAGCTGCTGCTGC
TGCGCCTGTTGATGATGGTAGTAAGTTGCTGAAGCGTAATTTGACTGGTTTGGTGAACCCTCCGTCTAAACATGTGGACA
TGTCTTCGGTTGAAGCAAGACAGGGTAGCGAAGAATGCTCTGTTGGATCTGTGAATATGGCCGTGCATCATCATCATCAT
CTTCTTCCAGGTGTAGTCAACGGGTTTAGTCCGGCTCCAGGTTTTATGTTTAATGTAGGCCAAGGTTTTGAGAAGAGTGA
AGAGCATACCGGAGGAGGAGGGAAGATTGTTTCAGGTAGCCAAGGGAGGGATCCCATCAAGAATGGAAGCGAAGAGCGCA
TAGATTCGGACGTGAGAAGTGATGATTTTGTGTTTTCTAGTGCCTCAGTTTCTGCTGCGAACCATATAGCAGAAAGTCAA
GATAGGGAACAAGTCCAAACATATAGCA




Most similar to sp|Q94AV5|WIP3_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q94AV5|WIP3_ARATH WPP domain-interacting protein 3
           OS=Arabidopsis thaliana GN=WIP3 PE=1 SV=1
          Length = 459

 Score =  164 bits (414), Expect = 8e-40
 Identities = 104/169 (61%), Positives = 109/169 (64%), Gaps = 14/169 (8%)
 Frame = +1

Query: 175 GIGSPQRSNSVDSLKVESPGGS---TRKGFGLKKWRRIKRDTPPVKDEAAAAAPVDDGSK 345
           G+GSPQRSNSV     ESPGGS   TRKGFGLKKWRRIKRD P V+DEAA   PVDDGSK
Sbjct: 33  GVGSPQRSNSV-----ESPGGSVHSTRKGFGLKKWRRIKRDGP-VRDEAA---PVDDGSK 83

Query: 346 LLKRNLTGLVNPPSKHVDMSSVEARQGSEECSVGSVNMAVXXXXXXXPGVVNGFSPAPGF 525
           LLKR L GLVNPPSKHV+ SSVEARQ SE  SVGSVNM         PGV NGFSP  G 
Sbjct: 84  LLKRGLAGLVNPPSKHVEFSSVEARQSSEG-SVGSVNMV------HHPGVANGFSPDIGC 136

Query: 526 MFNVGQGFEKSEEHTXXXXXXXXXXXXR-----------DPIKNGSEER 639
           MF VGQ FEKSEEH+            +           D IK  SEER
Sbjct: 137 MFAVGQAFEKSEEHSGNTIGGKNVVGGKVVSGSQEKLWSDTIKRASEER 185